Faculty Information

Official position and committee in Univ.

Research topic, funded research, and department laboratory expense

（Last updated : 2024-03-30 11:51:27）

SUWA Makiko
Department Aoyama Gakuin University Department of Chemistry and Biological Science, College of Science and Engineering

Position Professor

■ Specialization and related fields

Structural biochemistry, Biophysics, Genome biology

■ Business career

2012/04～

Aoyama Gakuin University College of Science and Engineering Department of Chemistry and Biological Science Professor

■ Official position and committee in Univ.

1.	2019/04/01～2021/03/31	Aoyama Gakuin University Associate Director, The Academic Writing Center
2.	2019/04/01～2021/03/31	Aoyama Gakuin University Director, Mandai Memorial Library
3.	2021/04/01～2023/03/31	Aoyama Gakuin University Associate Director, The Academic Writing Center
4.	2021/04/01～2023/03/31	Aoyama Gakuin University Director, Mandai Memorial Library

■ Research topic, funded research, and department laboratory expense

1.	1995/04～	Research on protein suructure and functional prediction by using bioinformatics (Key Word : )
2.	2008/04～2011/03	Research that aims at unified understanding of odorant system (Key Word : )
3.	2001/04～	SEVENS: Database of G-prrotein coupled receptors comprehensively identified from genomes (Key Word : )

■ Book and thesis

1.	Article	Bioinformatics Tools for Predicting GPCR Gene Functions. pp.205-224 (Single) 2013/09
2.	Article	Identification of a binding element for the cytoplasmic regulator FROUNT in the membrane-proximal carboxy-terminal region of chemokine receptors CCR2 and CCR5. (Collaboration) 2013/10
3.	Book	Bioinformatics dor predicting membrane protein structure pp.204-213 (Single) 2013/10
4.	Article	Structural Elements of the Signal Propagation Pathway in Squid Rhodopsin and Bovine Rhodopsin The Journal of Physical Chemistry B, pp.6172-6179 (Collaboration) 2011/04
5.	Article	Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences Phalmaceuticals, pp.652-664 (Collaboration) 2011/04
6.	Article	Discrimination of Golgi Type II Membrane Proteins Based on Their Hydropathy Profiles and the Amino Acid Propensities of Their Transmembrane Regions Bioscience Biotechnology and Biochemistry pp.82-88 (Collaboration) 2011/01
7.	Article	A bioinformatics strategy to produce a cyclically developing project structure Synthesiology pp.1-12 (Collaboration) 2010
8.	Article	Highly selective tuning of a silkworm olfactory receptor to a key mulberry leaf volatile Curr. Biol pp.81-890 (Collaboration) 2009
9.	Article	TMFunction: database for functional residues in membrane proteins. Nucleic Acids Res pp.D201-D204 (Collaboration) 2009/01
10.	Article	The genome of a lepidopteran model insect, the silkworm Bombyx mori Insect Biochemistry and Molecular Biology Insect Biochemistry and Molecular Biology pp.1036-1045 (Collaboration) 2008
11.	Article	TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. Comput. Biol. Chem pp.227-231 (Collaboration) 2008
12.	Article	The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res pp.D793-D799 (Collaboration) 2008
13.	Article	Current developments on beta-barrel membrane proteins: sequence and structure analysis, discrimination and prediction Curr. Protein Pept. Sci pp.580-599 (Collaboration) 2007
14.	Article	Identification of glycosyl transferases focusing on Golgi transmembrane region Trends in Glycoscience and Glycotechnology pp.41-47 (Collaboration) 2007
15.	Article	TMB finding pipeline: novel approach for detecting beta-barrel membrane proteins in genomic sequences J Chem. Inf. Model pp.2456-2461 (Collaboration) 2007
16.	Article	TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences Nucleic Acids Res. pp.D314-D316 (Collaboration) 2007
17.	Article	Odorant Receptor Map in the Mouse Olfactory Bulb: In Vivo Sensitivity and Specificity of Receptor-Defined Glomeruli Neuron pp.857-869 (Collaboration) 2006
18.	Article	Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns Bioinformatics pp.1211-1216 (Collaboration) 2006
19.	Article	Discrimination of outer membrane proteins using machine learning algorithms Proteins: Structure Function and Bioinformatics pp.1031-1037 (Collaboration) 2006
20.	Article	Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity PROTEIN Engineering Design & Selection pp.277-283 (Collaboration) 2006
21.	Article	Pivotal function for cyteplasmic protein FROUNT in CCR2-mediated monocyte chemotaxis Nature immunology pp.827-835 (Collaboration) 2005
22.	Article	Structural Basis for a Broad But Selective Ligand Spectrum of a Mouse Olfactory Receptor: Mapping the Odorant-Binding Site J. Neurosci pp.1806-1815 (Collaboration) 2005
23.	Article	"Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals Nucleic Acids Res. pp.2355-2363 (Collaboration) 2005
24.	Article	GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using support vector machines and a hidden Markov model Nucleic Acid Res. pp.W148-W153 (Collaboration) 2005
25.	Article	TMBETA-NET:discrimination and prediction of membrane spanning beta-strands in outer membrane proteins Nucleic Acids Res pp.W164-W167 (Collaboration) 2005
26.	Article	A Simple Statistical Method for Discriminating Outer Membrane Proteins with Better Accuracy Gene pp.53-62 (Collaboration) 2005
27.	Article	Automatic gene collection system for Genome-Scale overview of G-Protein coupled receptors in Eukaryotes Gene pp.63-73 (Collaboration) 2005
28.	Article	Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes. Gene pp.53-62 (Collaboration) 2005
29.	Article	Structural Analysis of Residues Involving Cation-Pi Interactions in Different Folding Types of Membrane Proteins Int. J. Biol. Macromol pp.55-62 (Collaboration) 2005
30.	Article	Application of residue distribution along the sequence for discriminating outer memebrane proteins Computational Biology and Chemistry pp.135-142 (Collaboration) 2005
31.	Article	GENIUS II: A database system for assigning coding regions in complete genomes to protein three-dimensional structures Bioinformatics pp.596-598 (Collaboration) 2004
32.	Article	Neural Network Based Prediction of Transmembrane beta-strand Segments in outer membrane proteins J. Compt. Chem pp.762-767 (Collaboration) 2004
33.	Article	Influence of cation-Pi interactions in protein-DNA complexes Polymer, pp.633-639 (Collaboration) 2004
34.	Article	Role of non-covalent interactions for determining the folding rate of two-state proteins Biophys Chem pp.263-272 (Collaboration) 2004
35.	Article	Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones PLoS. Biol. pp.0856-0875 (Collaboration) 2004
36.	Article	Variation of Amino Acid Properties in All-beta Globular and Outer Membrane Protein Structures Int. J. Biol. Macromol pp.93-98 (Collaboration) 2003
37.	Article	"SEVENS", Nucleic Acids Research Nucleic Acids Research. (Collaboration) 2003
38.	Article	Human Full-length Pre-mRNA Sequence Dataset for Computational Gene Prediction and Alternative Splicing Analysis Genome Informatics Series pp.412-413 (Collaboration) 2003
39.	Article	An Algorithm for Classification of Alternative Splicing and Transcriptional Initiation and Its Genome-Wide Application pp.424-425 (Collaboration) 2003
40.	Article	Bioinformatics Studies on Transmembrane Strand Proteins Genome Informatics, Series pp.555-556 (Collaboration) 2003
41.	Article	Correlated Mutation Analysis of C2H2 Zinc Finger Domains Genome Informatics Series pp.565-566 (Collaboration) 2003
42.	Article	GENIUS II: A database system including complete genome ORFs that are assigned to protein three-dimensional domains Genome Informatics Series pp.517-518 (Collaboration) 2002
43.	Article	SEVENS: Comperative Collection of Human Seven Transmemebrane Helix Receptors pp.511-512 (Collaboration) 2002
44.	Article	Classification of C2H2 Zinc Finger Domains Using Support Vector Machines Genome Informatics Series pp.314-315 (Collaboration) 2002
45.	Article	HUNT: launch of a full-length cDNA database from the Helix Research Institute. Nucleic Acids Res. pp.185-188 (Collaboration) 2001
46.	Article	Classification and Analysis of Inter-Helical Loop Segments in Membrane Proteins Genome Informatics Series pp.332-333 (Collaboration) 2001
47.	Article	Dataset Construction for Gene Structure Prediction and Alternative Splicing Analysis Genome Informatics Series pp.423-423 (Collaboration) 2001
48.	Article	An Automated System for finding seven Transmembrane Helix Receptors from Human Genome Genome Informatics Series pp.425-426 (Collaboration) 2001
49.	Article	A Novel Measure Characterized by a Polar Energy Surface Approximation for Recognition and Classification of Transmembrane Protein Structures Proteins: Struct. Funct. and Gennet pp.504-517 (Collaboration) 2000
50.	Article	Using the CATH domain database to assign structures and functions to the genome sequences. Biochem. Soc. Trans. pp.269-275 (Collaboration) 2000
51.	Article	A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzle Protein Eng pp.71-778 (Collaboration) 2000
52.	Article	An integrated analysis and database system for full-length cDNA Genome Informatics Series pp.12-23 (Collaboration) 2000
53.	Article	Gene Discovery of G-protein Coupled Receptors from Human Genome Genome Informatics Series pp.410-411 (Collaboration) 2000
54.	Article	Polarity Difference Score: A New Measure for Recognition and Classification of Transmembrane Protein Structures Genome Informatics Series pp.412-413 (Collaboration) 2000
55.	Article	Combining sensitive database sequence searches with multiple intermediates to detect distant homologues Protein Eng pp.95-100 (Collaboration) 1999
56.	Article	Genome analysis: Assigning protein coding regions to three-dimensional structures Protein Sci. pp.771-777 (Collaboration) 1999
57.	Article	Optimal configuration of pyrene excimer induced by the excimer-forming two-probe nucleic acid hybridization method Nucleic Acids Symp. Ser. pp.83-84 (Collaboration) 1997
58.	Article	GoodMotif: The System for Finding High Quality Motifs That Can Discriminate a Unique Protein Family Genome Informatics Series pp.342-343 (Collaboration) 1997
59.	Article	Interaction stabilizing tertiary structure of bacteriorhodopsin studied by denaturation experiments Proteins: Struct. Funct. and Gennet. pp.350-362 (Collaboration) 1995
60.	Article	A Continuum Theory for the Prediction of Lateral and Rotational Positioning of alpha-Helices in Membrane Proteins: Bacteriorhodopsin Proteins: Struct. Funct. and Gennet. pp.363-367 (Collaboration) 1995
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