Faculty Information

（Last updated : 2024-03-28 14:42:19）

IKEDA Masami
Department Aoyama Gakuin University Department of Chemistry and Biological Science, College of Science and Engineering

Position Assistant Professor

■ Specialization and related fields

Life, health and medical informatics, Biophysics, chemical physics and soft matter physics, Bioorganic chemistry, Database

■ Business career

1.	2012/09～2013/03	Aoyama Gakuin University College of Science and Engineering Department of Chemistry and Biological Science Research Associate
2.	2013/04～2018/03	Aoyama Gakuin University College of Science and Engineering Department of Chemistry and Biological Science Assistant Professor
3.	2024/04～	Aoyama Gakuin University College of Science and Engineering Department of Chemistry and Biological Science Assistant Professor

■ Book and thesis

1.	Article	"A computational identification method for GPI-anchored proteins by artificial neural network" Current Bioinformatics (Bentham Science Publishers) pp.125-131 (Collaboration) 2012/06
2.	Article	"Discrimination of Golgi type II membrane proteins based on their hydropathy profiles and the amino acid propensities of their transmembrane regions" Bioscience, Biotechnology, and Biochemistry (Japan Society for Bioscience, Biotechnology, and Agrochemistry) pp.82-88 (Collaboration) 2011/01
3.	Article	"A discrimination method for Golgi type II membrane proteins based on the hydropathy alignment and the position-specific score matrix around their transmembrane regions" Proceedings of the 2nd International Conference on Trendz in Information Sciences and Computing (IEEE Xplore) pp.82-87 (Collaboration) 2010/12
4.	Article	"Identification of mammalian GPI-anchored proteins based on amino acid propensities in their GPI attachment signal sequences" Proceedings of the 2nd International Conference on Trendz in Information Sciences and Computing (IEEE Xplore) pp.113-117 (Collaboration) 2010/12
5.	Article	"Identification of GPI-anchored proteins using position specific score matrix" FEBS Journal (Wiley-Blackwell) pp.126-127 (Collaboration) 2009/06
6.	Article	"Development of prediction method for GPCR - G-protein coupling selectivity using amino acid properties" The Open Structural Biology Journal (Bentham Science Publishers) pp.149-158 (Collaboration) 2009/02
7.	Article	"ConPred II: a consensus prediction method for obtaining transmembrane topology models with high-reliability" Nucleic Acids Research (Oxford University Press) pp.W390-W393 (Collaboration) 2004/07
8.	Article	"ConPred_elite: a highly reliable approach to transmembrane topology prediction" Computational Biology and Chemistry (Elsevier) pp.51-60 (Collaboration) 2004/02
9.	Article	"Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern" Computational Biology and Chemistry (Elsevier) pp.39-49 (Collaboration) 2004/02
10.	Article	"Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot"" Immunogenetics (SpringerLink) pp.570-581 (Collaboration) 2003/11
11.	Article	"A highly reliable approach to transmembrane topology prediction" Proceedings of the European Conference on Computational Biology 2003 pp.177-178 (Collaboration) 2003/09
12.	Article	"Comprehensive analysis of transmembrane topologies in prokaryotic genomes" Gene (Elsevier) pp.77-86 (Collaboration) 2003/01
13.	Article	"TMPDB: a database of experimentally-characterized transmembrane topologies" Nucleic Acids Research (Oxford University Press) pp.406-409 (Collaboration) 2003/01
14.	Article	"Identification and classification of eukaryotic GPCRs by binary topology pattern" Genome Informatics (Universal Academy Press) pp.334-335 (Collaboration) 2002/12
15.	Article	"The presence of signal peptide significantly affects transmembrane topology prediction" Bioinformatics (Oxford University Press) pp.562-566 (Collaboration) 2002/12
16.	Article	"Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies" In Silico Biology (IOS Press) pp.19-33 (Collaboration) 2002/01
17.	Article	"Classification of eukaryotic 7-tms transmembrane proteins by binary topology pattern" Genome Informatics (Universal Academy Press) pp.336-337 (Collaboration) 2001/12
18.	Article	"Comprehensive analysis of transmembrane protein sequences in 39 microbial genomes" Genome Informatics (Universal Academy Press) pp.338-339 (Collaboration) 2001/12
19.	Article	"The prediction accuracy of transmembrane topology is improved by a consensus method: An application to genome-wide analysis" Proceedings of the 4th International Conference on Biological Physics pp.60 (Collaboration) 2001/07
20.	Article	"Structure design of neural networks using genetic algorithm" Complex Systems (Complex Systems Publications) pp.161-175 (Collaboration) 2001/03
21.	Article	"Evaluation of transmembrane topology prediction methods by using an experimentally characterized topology dataset" Genome Informatics (Universal Academy Press) pp.426-427 (Collaboration) 2000/12
Display 5 items
Display all(21)